scFlow | The Manual
Preface
Structure of the manual
Acknowledgments
1
scFlow
2
nf-core/scflow
2.0.1
About nf-core/scflow
2.1
Core Concepts
2.1.1
Manifest File
2.1.2
Sample Sheet File
2.1.3
Parameters File
2.1.4
Ensembl Mappings File
2.1.5
Cell-type Data Folder
2.1.6
Cell-type Mapping File
2.1.7
Genes of Interest File
2.1.8
Working Directory
2.2
Example Run
2.2.1
Getting Started
2.2.2
Setting up Nextflow
2.2.3
First Run
3
Troubleshooting
3.1
Infrastructure Configuration
4
Frequently Asked Questions
References
Published with bookdown
scFlow | The Manual
Chapter 1
scFlow
Detailed documentation for the
scFlow
toolkit is available at:
http://www.github.com/combiz/scflow
.